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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32142205_32142726_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32142205 - 32142726
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTTTCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
LYTTVSKNGLELQSSGRGRF
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85.2
0.79
0.8
80.7
30.4
Minor 5ss
34.1
-1.8
3.5
46.6
44.1
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
MOCS1
Ensembl Gene ID:
ENSAPLG00000012806
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041714
32142151 - 32166027
23877