Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32143669_32149939_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32143669 - 32149939

Intron Length:

6271

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTTTTCTTCATG

Flanking Amino Acid:

LIRPDVVDIVGQLNKLEGLK

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.7

26.6

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

0.74

0.8

77.1

37.1

Minor 5ss

-1.6

2.8

44.6

43.4

Minor BPS

66.2

0.36

1.8

74.4

38.6

Associated Gene:

Gene:

MOCS1

Ensembl Gene ID:

ENSAPLG00000012806

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035086

32138342 - 32165998

27657

ENSAPLT00000021575

32136676 - 32165302

28627

ENSAPLT00000013353

32136676 - 32166462

29787

ENSAPLT00000041714

32142151 - 32166027

23877

ENSAPLT00000040049

32141533 - 32165998

24466