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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32156342_32156666_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32156342 - 32156666
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACAAT
5'SS Class:
major
3'SS Sequence:
TTGTTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTTGTTAATT
Flanking Amino Acid:
VRFIEYMPFDGNKWNFKKMV
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
73
37.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.7
0.58
0.9
67.8
42.5
Minor 5ss
40.5
-1.1
3.1
53.9
44.6
Minor BPS
65.1
0.55
2
83.97
37.3

Associated Gene:

Gene:
MOCS1
Ensembl Gene ID:
ENSAPLG00000012806
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021575
32136676 - 32165302
28627
ENSAPLT00000013353
32136676 - 32166462
29787
ENSAPLT00000041714
32142151 - 32166027
23877
ENSAPLT00000040049
32141533 - 32165998
24466
ENSAPLT00000035086
32138342 - 32165998
27657