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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32156780_32157472_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32156780 - 32157472
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGATA
5'SS Class:
major
3'SS Sequence:
TGCATTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
CTAATATAAACT
Flanking Amino Acid:
LPCEASSTAKSYKVPHFQGQ
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.8
37
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
75.7
0.58
0.8
73.6
36.9
Minor 5ss
29
-2.4
3.4
38.5
46.8
Minor BPS
47.5
-0.1
1.9
66.22
44.1

Associated Gene:

Gene:
MOCS1
Ensembl Gene ID:
ENSAPLG00000012806
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013353
32136676 - 32166462
29787
ENSAPLT00000041714
32142151 - 32166027
23877
ENSAPLT00000040049
32141533 - 32165998
24466
ENSAPLT00000035086
32138342 - 32165998
27657
ENSAPLT00000021575
32136676 - 32165302
28627