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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3217421_3282009_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3217421 - 3282009
Intron Length:
64589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TACAACTGAAGA
Flanking Amino Acid:
RQQILDEKPKLQVELDQEYQ
Intron Amino Acid Position:
1007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
45.7
-0.3
1.9
55.47
42.7

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434