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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32201349_32202865_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32201349 - 32202865
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
LQHLPEAAKVNLVELEKEVN
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.4
0.55
1
68.9
37.1
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
DAAM2
Ensembl Gene ID:
ENSAPLG00000012050
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022819
32186855 - 32378598
191744
ENSAPLT00000012597
32186855 - 32312867
126013