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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32202974_32204868_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32202974 - 32204868
Intron Length:
1895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
KIADTKSSIDRNITLLHYLI
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.8
42.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
79.2
0.66
1
83.3
30.6
Minor 5ss
41.8
-0.9
3.2
54.5
49.7
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
DAAM2
Ensembl Gene ID:
ENSAPLG00000012050
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022819
32186855 - 32378598
191744
ENSAPLT00000012597
32186855 - 32312867
126013