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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32239942_32246609_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32239942 - 32246609
Intron Length:
6668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TATCATCTAACC
Flanking Amino Acid:
VYAAERTRFQTLLNELDRSM
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
51.4
0.02
1.8
67.24
37.5

Associated Gene:

Gene:
DAAM2
Ensembl Gene ID:
ENSAPLG00000012050
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022819
32186855 - 32378598
191744
ENSAPLT00000012597
32186855 - 32312867
126013