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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32246944_32253831_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32246944 - 32253831
Intron Length:
6888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTCCCTACCT
Flanking Amino Acid:
LKTALRTQPMRFVTRFIELD
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.7
0.74
0.8
79.8
32.2
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
69.6
0.69
2
92.91
35.6

Associated Gene:

Gene:
DAAM2
Ensembl Gene ID:
ENSAPLG00000012050
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022819
32186855 - 32378598
191744
ENSAPLT00000012597
32186855 - 32312867
126013