About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32280865_32301706_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32280865 - 32301706
Intron Length:
20842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCACAATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACAATC
Flanking Amino Acid:
ELNARFSELVDELDLTDKNR
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.2
0.43
1
58.8
41.6
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
58.8
0.26
1.8
75.28
35.1

Associated Gene:

Gene:
DAAM2
Ensembl Gene ID:
ENSAPLG00000012050
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022819
32186855 - 32378598
191744
ENSAPLT00000012597
32186855 - 32312867
126013