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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32301910_32312827_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32301910 - 32312827
Intron Length:
10918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TCTCACTCATCT
Flanking Amino Acid:
MLEEHDQKIASYT
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
48.5
-0
2
71
45.3

Associated Gene:

Gene:
DAAM2
Ensembl Gene ID:
ENSAPLG00000012050
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022819
32186855 - 32378598
191744
ENSAPLT00000012597
32186855 - 32312867
126013