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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32397152_32397947_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32397152 - 32397947
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTACGAGGG
5'SS Class:
major
3'SS Sequence:
CCATGCTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACTACTTTAATT
Flanking Amino Acid:
KPLGRRQQAGIYSVDDDDKS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
51.9
45.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
62.4
0.28
1
55
40
Minor 5ss
28.3
-2.5
3.4
29.5
43.3
Minor BPS
71.2
0.74
1.2
78.71
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028047
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045289
32397086 - 32401230
4145