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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32398058_32401094_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32398058 - 32401094
Intron Length:
3037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTAATATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTATTTGATT
Flanking Amino Acid:
VNNKRENYKFKFQKIFDQEA
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81
0.7
0.9
78
40
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
65.8
0.58
1.4
80.61
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028047
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045289
32397086 - 32401230
4145