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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32507208_32513886_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32507208 - 32513886
Intron Length:
6679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAATAATT
Flanking Amino Acid:
IEDNKQLLKQRFAEAKCLGE
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
70
0.45
1
64.9
40.4
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
52.1
0.14
2.2
82.17
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035742
32507105 - 32567244
60140