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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32513943_32536760_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32513943 - 32536760
Intron Length:
22818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACATTTTAAAAT
Flanking Amino Acid:
EKINEVRNKINHLKGELTQR
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.5
28.2
Major BPS
100
1.24
0.5
100
0
Major PPT
88.8
0.87
0.7
84.5
30.4
Minor 5ss
32.3
-2
2.6
35.1
34.3
Minor BPS
49
0.01
1.7
63.47
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035742
32507105 - 32567244
60140