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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32561701_32563691_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32561701 - 32563691
Intron Length:
1991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
NNFNSSTSKTRTSPSSNTPI
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035742
32507105 - 32567244
60140