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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32563799_32567227_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32563799 - 32567227
Intron Length:
3429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TATTCTTTATTT
Flanking Amino Acid:
KARQNILQKKGLGNK*
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
79
0.72
1
78.4
31.2
Major PPT
88.2
0.86
0.7
85.7
28.5
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
71.2
0.74
1.5
84.84
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035742
32507105 - 32567244
60140