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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32579313_32579852_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32579313 - 32579852
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTCTTTTGATA
Flanking Amino Acid:
FFAGTVVTTIGYGNRSPSTV
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
91.3
0.93
0.7
84.6
36
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
56.2
0.19
1.1
61.77
31.5

Associated Gene:

Gene:
KCNK16
Ensembl Gene ID:
ENSAPLG00000005529
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005707
32574990 - 32584237
9248