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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32582647_32584013_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32582647 - 32584013
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
CTGGATTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTTCCTGGATT
Flanking Amino Acid:
STIGFGDYVVGTNPNKHYIP
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.5
0.6
1
72.8
41.9
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
70.8
0.74
1.4
84.88
35.4

Associated Gene:

Gene:
KCNK16
Ensembl Gene ID:
ENSAPLG00000005529
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005707
32574990 - 32584237
9248