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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32588585_32599600_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32588585 - 32599600
Intron Length:
11016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTCATGTTATT
Flanking Amino Acid:
RGAALQRLIQGIIEAYKSGI
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
86.1
0.81
0.8
80.7
31.3
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
41.5
-0.5
2.3
61.68
42.6

Associated Gene:

Gene:
KCNK17
Ensembl Gene ID:
ENSAPLG00000005520
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005701
32587892 - 32612116
24225