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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32713747_32715117_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32713747 - 32715117
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
ATATGCTTATCT
Flanking Amino Acid:
IFAATVITTIGYGNVSPKTP
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
82.1
37.7
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
83.1
0.74
0.7
81.9
29.8
Minor 5ss
45.8
-0.4
2.9
67.6
43.1
Minor BPS
59.5
0.38
2
79.34
42.5

Associated Gene:

Gene:
KCNK5
Ensembl Gene ID:
ENSAPLG00000005475
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005664
32684546 - 32718910
34365