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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32715285_32716186_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32715285 - 32716186
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTTTCCCTGATT
Flanking Amino Acid:
QFLTKRGVSLRKAQITCTAI
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.2
36.2
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
38.1
-1.3
3.2
48.2
42.1
Minor BPS
73.9
0.83
1.6
92.15
30.1

Associated Gene:

Gene:
KCNK5
Ensembl Gene ID:
ENSAPLG00000005475
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005664
32684546 - 32718910
34365