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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32753528_32755412_F

Intron Information:

Intron Rank:
142512
Intron Class:
major
Intron Phase:
Intron Coordinates:
32753528 - 32755412
Intron Length:
1885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
GCTCTTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78
0.63
0.9
73
36.4
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
55.9
0.26
1.8
77.69
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026794
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034486
32752912 - 32783143
30232