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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32779731_32782440_F

Intron Information:

Intron Rank:
142514
Intron Class:
major
Intron Phase:
Intron Coordinates:
32779731 - 32782440
Intron Length:
2710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
CGACCTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTTACTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
70.7
41
Major BPS
74.2
0.6
1
67
39.4
Major PPT
70.1
0.45
0.9
61.5
39.8
Minor 5ss
33
-1.9
3
38.5
41
Minor BPS
73.7
0.83
1.8
93.69
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026794
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043941
32759128 - 32783143
24016
ENSAPLT00000034486
32752912 - 32783143
30232