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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32798568_32803223_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32798568 - 32803223
Intron Length:
4656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGGACCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
AILYCFINNEVQMEFRKSWE
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
62.5
0.28
1
60.4
41.2
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
GLP1R
Ensembl Gene ID:
ENSAPLG00000005054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042511
32798400 - 32866242
67843
ENSAPLT00000031483
32798400 - 32858144
59745
ENSAPLT00000028199
32798400 - 32860806
62407
ENSAPLT00000005251
32798400 - 32883423
85024