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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32807424_32811271_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
32807424 - 32811271
Intron Length:
3848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTTGGTTTA
5'SS Class:
major
3'SS Sequence:
GCCATCTGCCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
TTTTTGCCATCT
Flanking Amino Acid:
GTVKYLYEDEGCWSRNYNMN
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.39
1.3
67.1
41
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
57.8
0.18
1
49.6
39.2
Minor 5ss
38.3
-1.3
3
41.8
44.9
Minor BPS
42.4
-0.5
2.5
72.42
44.5

Associated Gene:

Gene:
GLP1R
Ensembl Gene ID:
ENSAPLG00000005054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031483
32798400 - 32858144
59745
ENSAPLT00000028199
32798400 - 32860806
62407
ENSAPLT00000005251
32798400 - 32883423
85024
ENSAPLT00000042511
32798400 - 32866242
67843