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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32822228_32825825_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32822228 - 32825825
Intron Length:
3598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
VIATAILLGFRHLHCTRNYI
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
70.6
41.4
Major BPS
62.2
0.3
1.2
53.6
41.6
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
38.6
-1.3
3.2
53
44.2
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
GLP1R
Ensembl Gene ID:
ENSAPLG00000005054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038857
32820394 - 32882227
61834
ENSAPLT00000031483
32798400 - 32858144
59745
ENSAPLT00000028199
32798400 - 32860806
62407
ENSAPLT00000005251
32798400 - 32883423
85024
ENSAPLT00000042511
32798400 - 32866242
67843