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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32828824_32851402_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32828824 - 32851402
Intron Length:
22579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCTAT
U12 Branch Point Sequence:
CTCCAGCCAACC
Flanking Amino Acid:
CPSYLPWANTVLHGQVYRFC
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
48.9
-0
1.3
46.4
38.3
Major PPT
79.5
0.66
1
77.3
37
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
35.6
-1.1
2.3
45.87
42.5

Associated Gene:

Gene:
GLP1R
Ensembl Gene ID:
ENSAPLG00000005054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031483
32798400 - 32858144
59745
ENSAPLT00000028199
32798400 - 32860806
62407
ENSAPLT00000005251
32798400 - 32883423
85024
ENSAPLT00000042511
32798400 - 32866242
67843
ENSAPLT00000038857
32820394 - 32882227
61834