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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32851514_32852726_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32851514 - 32852726
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
CGTGACATAATC
Flanking Amino Acid:
YLYEAPPIAAEGKFCNRTFD
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
79.6
0.67
0.8
73.4
31.2
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
47
-0.2
1.9
56.87
41.8

Associated Gene:

Gene:
GLP1R
Ensembl Gene ID:
ENSAPLG00000005054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031483
32798400 - 32858144
59745
ENSAPLT00000028199
32798400 - 32860806
62407
ENSAPLT00000005251
32798400 - 32883423
85024
ENSAPLT00000042511
32798400 - 32866242
67843
ENSAPLT00000038857
32820394 - 32882227
61834