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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32852824_32858001_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
32852824 - 32858001
Intron Length:
5178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTGG
5'SS Class:
weak_major
3'SS Sequence:
ATTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
ATACCTACAATG
Flanking Amino Acid:
NTQVAMCSLQSSDGSLSGVM
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
62.3
44.7
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
88.1
0.86
0.7
85.6
28.2
Minor 5ss
54.4
0.15
2.1
67.3
43.8
Minor BPS
44.9
-0.5
1.8
49.67
38

Associated Gene:

Gene:
GLP1R
Ensembl Gene ID:
ENSAPLG00000005054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031483
32798400 - 32858144
59745