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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32852824_32866027_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32852824 - 32866027
Intron Length:
13204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
ATACCTACAATG
Flanking Amino Acid:
MCNYVDVTESSDGSLSGVM
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
88.1
0.86
0.7
85.6
28.2
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
44.9
-0.5
1.8
49.67
38

Associated Gene:

Gene:
GLP1R
Ensembl Gene ID:
ENSAPLG00000005054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042511
32798400 - 32866242
67843