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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3285556_3285680_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3285556 - 3285680
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
TTTTACACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
QLKKLKETCEKEKKELKKKM
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.6
38.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.2
0.63
0.8
75.8
33.7
Minor 5ss
38.8
-1.3
3.3
50.1
40.9
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434