About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3285758_3287897_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3285758 - 3287897
Intron Length:
2140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
TTTCTTGGAATT
Flanking Amino Acid:
KYQKREHIKLLIQKLTDVAE
Intron Amino Acid Position:
917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77
34.4
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
86.2
0.81
0.7
85.3
28.6
Minor 5ss
42.8
-0.8
3
54.9
44.6
Minor BPS
48.2
-0
2
73.39
38.1

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434