About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32893516_32896733_R

Intron Information:

Intron Rank:
90
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32893516 - 32896733
Intron Length:
3218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
TGTGGCTTAATT
Flanking Amino Acid:
FWMTGFFNPQGFLTAMRQEA
Intron Amino Acid Position:
4528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
70
37.3
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
73.3
0.53
1.1
71.8
42.7
Minor 5ss
35.6
-1.6
3.5
48.7
47.8
Minor BPS
63.6
0.51
1.9
80.32
42.1

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003597
32892646 - 33023858
131213