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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32902923_32905377_R

Intron Information:

Intron Rank:
83
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32902923 - 32905377
Intron Length:
2455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTACATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
HPKFPITLLQIALKFTNEPP
Intron Amino Acid Position:
4183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.5
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.4
0.77
0.8
78.5
34.3
Minor 5ss
42.9
-0.8
2.4
51.4
45
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003597
32892646 - 33023858
131213