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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32905531_32907767_R

Intron Information:

Intron Rank:
82
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32905531 - 32907767
Intron Length:
2237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATTGTTATTT
Flanking Amino Acid:
RKIIQMSMQQGGWVLLQNCH
Intron Amino Acid Position:
4132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
74.7
29.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.9
0.58
0.9
74.6
40.1
Minor 5ss
33.4
-1.9
2.8
39.2
46.2
Minor BPS
48.4
-0
2.2
70.41
41.1

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003597
32892646 - 33023858
131213