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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32918955_32919626_R

Intron Information:

Intron Rank:
74
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32918955 - 32919626
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTCTGCTTAACA
Flanking Amino Acid:
NFMKSGTSFKVKVGDKEVDV
Intron Amino Acid Position:
3715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
76.4
0.59
0.9
69.7
35.8
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
67.7
0.55
1.8
74.7
43.3

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020957
32907553 - 33023858
116306
ENSAPLT00000003597
32892646 - 33023858
131213