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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32919783_32920635_R

Intron Information:

Intron Rank:
73
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32919783 - 32920635
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAAT
5'SS Class:
major
3'SS Sequence:
CTTATTTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TTGTCCTTATAT
Flanking Amino Acid:
KKKEQDNELQVTTLNHKYFR
Intron Amino Acid Position:
3663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.4
34.3
Major BPS
70.2
0.5
1
72.1
33
Major PPT
67.6
0.4
1.7
80.4
37
Minor 5ss
35
-1.7
3.1
47.8
47.9
Minor BPS
69.4
0.69
1.7
85.34
40.9

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020957
32907553 - 33023858
116306
ENSAPLT00000003597
32892646 - 33023858
131213