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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32926240_32927640_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32926240 - 32927640
Intron Length:
1401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAATAAA
5'SS Class:
major
3'SS Sequence:
TTTCTTGAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTTCTTGAAAT
Flanking Amino Acid:
ALEEAEAALNTIKPADIATV
Intron Amino Acid Position:
3338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
74.7
29.7
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
69
0.43
1
66.6
38.6
Minor 5ss
31.4
-2.1
2.8
37.2
40.6
Minor BPS
73.5
0.82
1.5
90.38
32.8

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003597
32892646 - 33023858
131213
ENSAPLT00000020957
32907553 - 33023858
116306