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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32934488_32934816_R

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32934488 - 32934816
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATATTTTGAACT
Flanking Amino Acid:
GYKIFQITLTRSYNVSNLSD
Intron Amino Acid Position:
3022

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.7
0.67
0.8
74.9
34.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
66.8
0.61
1.3
79.82
35.7

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003597
32892646 - 33023858
131213
ENSAPLT00000020957
32907553 - 33023858
116306