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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32942774_32944796_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32942774 - 32944796
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTCTTTAATT
Flanking Amino Acid:
SSATEPFMFQRTIESYVDKR
Intron Amino Acid Position:
2671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
80.3
0.68
0.8
78
35
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
83.7
1.13
1
91.31
32.6

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020957
32907553 - 33023858
116306
ENSAPLT00000003597
32892646 - 33023858
131213