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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3294521_3299631_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3294521 - 3299631
Intron Length:
5111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCATATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTCATATTT
Flanking Amino Acid:
LEDEEEVKKEVDHGDAPSEA
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.8
0.76
0.8
81.2
35.3
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
49.6
0.05
1.9
69.36
42

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434