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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32959238_32960044_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32959238 - 32960044
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
CACCCTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTCTTCACC
Flanking Amino Acid:
KLCEEQLTKQVHYDFGLRNI
Intron Amino Acid Position:
2190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
71.3
0.48
0.8
65.3
30.1
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
75
0.77
1.7
85.68
32.7

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003597
32892646 - 33023858
131213
ENSAPLT00000020957
32907553 - 33023858
116306