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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32972159_32973059_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32972159 - 32973059
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGATTCTAAAAA
Flanking Amino Acid:
PILQNKDDIEDICISATKEK
Intron Amino Acid Position:
1574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
50.7
0.02
1.7
60.5
38.9

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003597
32892646 - 33023858
131213
ENSAPLT00000020957
32907553 - 33023858
116306