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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32973301_32976015_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32973301 - 32976015
Intron Length:
2715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AACTCAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTATTTTAACT
Flanking Amino Acid:
INAELLDFQNRCRRLPKGLQ
Intron Amino Acid Position:
1493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
65
0.34
1
56.5
38
Minor 5ss
43.5
-0.7
2.7
59
45.7
Minor BPS
75.7
0.89
1.1
86.62
32.6

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020957
32907553 - 33023858
116306
ENSAPLT00000003597
32892646 - 33023858
131213