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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32976154_32977272_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32976154 - 32977272
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATTCGTATGACT
Flanking Amino Acid:
VTDYAVLHKVRKELNLLQKL
Intron Amino Acid Position:
1447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85
0.79
0.9
76.9
42.1
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
47.8
-0
2
71.84
39

Associated Gene:

Gene:
DNAH8
Ensembl Gene ID:
ENSAPLG00000003458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020957
32907553 - 33023858
116306
ENSAPLT00000003597
32892646 - 33023858
131213