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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3299742_3300542_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3299742 - 3300542
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTGTGTTATTT
Flanking Amino Acid:
VKDYVPDTYADVIEALSNPI
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
74.9
0.56
0.9
66.7
44.2
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
48.3
-0
2.3
74.56
43.3

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434