About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33018499_33019834_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
33018499 - 33019834

Intron Length:
1336

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAG|GTAACTTTT

5'SS Class:
strong_major

3'SS Sequence:
AAATTCTTTTCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AATAAAT

U12 Branch Point Sequence:
AAATAAATAAAT

Flanking Amino Acid:
FYQEGDVPGIECGRTFPAVV

Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
85.6
0.84
1.1
87.9
29.3

Major BPS
65.7
0.39
1
71.3
30.3

Major PPT
77.9
0.63
0.9
74.3
40.2

Minor 5ss
55.9
0.2
2.5
76
39.7

Minor BPS
43.9
-0.3
2
62.13
40.1

Associated Gene:

Gene:
DNAH8

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

32907553 - 33023858
116306

32892646 - 33023858
131213