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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33049014_33050161_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33049014 - 33050161
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTAC
5'SS Class:
major
3'SS Sequence:
ATCTTTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTTTCTCAAAT
Flanking Amino Acid:
VILAARCHYFRALLYGGMRE
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.5
32.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.9
0.72
0.7
77
31.2
Minor 5ss
30.9
-2.2
3.3
40.1
46.3
Minor BPS
61
0.42
1.6
76.88
39

Associated Gene:

Gene:
BTBD9
Ensembl Gene ID:
ENSAPLG00000002877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002942
33048829 - 33156193
107365