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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33050526_33052262_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33050526 - 33052262
Intron Length:
1737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATCTT
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TTTTGTTTGATT
Flanking Amino Acid:
SSEGFLSLSKAALLSIVLRD
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.8
38.2
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
45.6
-0.5
3
67.2
43.9
Minor BPS
67.2
0.62
1.7
86.34
34.1

Associated Gene:

Gene:
BTBD9
Ensembl Gene ID:
ENSAPLG00000002877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002942
33048829 - 33156193
107365